The next generation of target capture technologies – large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity
Dapprich J, Ferriola D, Mackiewicz K, Clark P, Rappaport E, D’Arcy M, Sasson A, Gai X, Schug J, Kaestner K, Monos D.: BMC Genomics. 2016 Jul 9;17(1):486.  PMID: 27393338

Microtubule Actin Crosslinking Factor 1 Regulates the Balbiani Body and Animal-Vegetal Polarity of the Zebrafish Oocyte
Gupta T, Marlow FL, Ferriola D, Mackiewicz K, Dapprich J, Monos D, Mullins M.  PLoS Genetics 2010 6(8): e1001073. doi:10.1371/journal.pgen.1001073

SNP-specific extraction of haplotype-resolved targeted genomic regions
Dapprich J, Ferriola D, Magira EE, Kunkel M, Monos D.  Nucleic Acids Res. 2008 Jul 8. PMID: 18611953

Haplotype-specific extraction: a universal method to resolve ambiguous genotypes and detect new alleles – demonstrated on HLA-B
Nagy M, Entz P, Otremba P, Schoenemann C, Murphy N, Dapprich J. Tissue Antigens 2007 Feb; 69(2):176-80. PMID: 17257321

Identification of a new HLA-B allele (B*1576) by haplotype specific extraction
Dapprich J, Witter K, Gabel HW, Murphy NB, Albert ED. Hum Immunol. 2007 May;68(5):418-21. Epub 2007 Feb 15. PMID: 17462508

Identification of a novel HLA-DPB1 allele (DPB1*1902) by haplotype-specific extraction and nucleotide sequencing 
Dapprich J, Magira E, Samonte MA, Rosenman K, Monos D. Tissue Antigens 2007 Mar; 69(3):282-4. PMID: 17493157

Global mapping of transposon location
Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC, Dunham MJ. PLoS Genetics 2006 Dec 15;2(12):e212. Epub 2006 Nov 1. PMID: 17173485

HLA-B*1586 is a novel, hybrid HLA-B15/B22 allele with unique serology and haplotypic association 
Yang Y, Aubrey M T, Zhang G, Ji Y, Freed B M Tissue Antigens 2006  67 (2), 176-177. doi: 10.1111/j.1399-0039.2006.00531.x

A single amino acid exchange shifts the serological reactivity of the novel HLA-B*4442 allele product from HLA-B44 to HLA-B21 
Mrazek F, Fae I, Ambruzova Z, Raida L, Kriegova E, Indrak K, Fischer GF, Petrek M. Int J Immunogenet. 2006 Jun;33(3):197-200.

The recombinant HLA-B*5518 allele supports the evidence of conserved haplotype association of rare alleles
Lebedeva TV, Huang A, Ohashi M, Sibilia P, Alosco SM, Kempenich J, Yu N. Tissue Antigens 2005  66 (2), 156-159. doi: 10.1111/j.1399-0039.2005.00442.x

A novel HLA-B*420502 allele identified by PCR-SSO/SSP routine typing and confirmed by Sequencing-based typing 
Mrazek F, Fae I, Ambruzova Z, Raida L, Indrak K, Petrek M,  Fischer G.F. Tissue Antigens 2005 65 (3), 275-277. doi: 10.1111/j.1399-0039.2005.00376.x

Identification of an HLA-B*07 allele variant (B*0740) in the Chinese Han population
Wang CY, Pan Q, Xue M, Miao KR, Fei XM, Zhou XY, Zhao X, KuKuruga D, Osowski L, Poore B, Beattie R, Shi WX, Zhang H. Tissue Antigens 2005  66 (2), 148-150. doi: 10.1111/j.1399-0039.2005.00438.x

B*4440: a novel  HLA-B allele identified by sequence-specific oligonucleotide hybridization and sequence-specific amplification
Heymann GA, Hoppe B, Nagy M, Schoenemann C, Kiesewetter H, Salama A. Tissue Antigens 2005: 65: 195-198.

A novel HLA-B*420502 allele identified by PCR-SSO/SSP routine typing and confirmed by Sequencing-based typing
Mrazek F, Fae I, Ambruzova Z, Raida L, Indrak K, Petrek M, Fischer GF Tissue Antigens 2005 65 (3), 275-277. doi: 10.1111/j.1399-0039.2005.00376.x

A Rapid, Automatable Method For Molecular Haplotyping
Dapprich J, Cleary MA, Gabel HW, Akkapeddi A, Iglehart B, Turino C, Beaudet L, Lian J, Murphy NB. HLA 2004: Immunobiology of the Human MHC. Proceedings of the 13th International Histocompatibility Workshop and Congress.  (Hansen JA and Dupont B, eds), Volume I & II, IHWG Press, Seattle, WA, 2004.  ISBN: 0-945278-03-9

Ambiguous allele combinations in HLA Class I and Class II sequence-based typing: when precise nucleotide sequencing leads to imprecise allele identification 
Adams SD, Barracchini KC, Chen D, Robbins FM, Wang L, Larsen P, Luhm R, Stroncek DF. J Transl Med. 2004 2: 30. Published online 2004 September 13. doi: 10.1186/1479-5876-2-30.

Description of a novel HLA-B allele, B*5613, identified during HLA-typing using sequence-specific oligonucleotide hybridization and sequence-specific amplification
Hoppe B, Heymann GA, Schoenemann C, Nagy M, Kiesewetter H, Salama A. Tissue Antigens 2004: 64: 616-618.

Technical Poster

Haplotype Specific Isolations from Genomic DNA using a High Throughput System

Tracking of Movable Genomic Elements and Copy Number Variations by Sequence Specific Capture and Microarray Analysis

Evaluation of Haplotype Specific Enrichment (HSE) for Phase Resolution of Multiple SNPs in the CFTR Locus

Changes in Retro-transposon Organization in the Saccharomyces Cerevisiae Genome During Natural and Experimental Evolution

Multiplexed Haplotype Specific Extraction (HSE) of Genomic DNA

Haploseparation and Amplification of Genomic DNA by Haplotype Specific Extraction (HSE) and Whole Genome Amplification